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Resolution Limits of Optical Microscopy and the Mind

How precise an image can fluorescence microscopy provide?

As modern optics and cell biology have flourished in recent years, they’ve each driven innovation in the other. Yet commonly employed imaging techniques, such as fluorescence microscopy, have...
fluorescence, microscopy
Sep, 01, 2011
Noisy Genes

Classifying variability of gene expression

Genetically identical cells or organisms grown in identical environments will differ phenotypically, because—even with a common script—gene expression is inherently variable, or noisy....
Apr, 01, 2006
Twin Curses Plague Biomedical Data Analysis

How to deal with too many dimensions and too few samples.

Noninvasive experimental techniques, such as magnetic resonance (MR), infrared, Raman and fluorescence spectroscopy, and more recently, mass spectroscopy (proteomics) and microarrays (genomics) have...
Sep, 01, 2005
Normal Mode Analysis: Calculation of the Natural Motions of Proteins
Advances in computational power and algorithms have led to longer and more accurate molecular dynamics simulations of protein folding. But these approaches, because they are computationally intensive...
Jun, 06, 2012
Behind the Connectome Commotion

Exploring the current state of connectomics--in the midst of hype

Connectomics is having a moment. Following on the heels of genomics, proteomics, transcriptomics, metabolomics, and microbiomics, the latest “omic” to seize the spotlight is generating...
brain, connectome
Jun, 20, 2013
Understanding Molecular Kinetics with Markov State Models
Atomistic simulations have the potential to elucidate the molecular basis of biological processes such as protein misfolding in Alzheimer’s disease or the conformational changes that drive...
Jan, 01, 2010
Teaching an Old Model New Tricks

Hidden Markov models estimate DNA loop kinetics

The hidden Markov model—a statistical model used for decades in fields as diverse as speech recognition and climatology—has received an update and a new application. Researchers at the...
Apr, 01, 2007
Mining Biomedical Literature: Using Computers to Extract Knowledge Nuggets

Researchers are not simply retrieving and repackaging what is already known, but are also deriving new knowledge by discovering connections that were previously unnoticed.

Not long ago, reading biomedical literature involved hours in the library combing through rows of dusty periodicals—not to mention pocketfuls of change for the copy machine. Now, although the...
Jul, 01, 2008

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