Open Source reflections; designing with code re-use; and Cygwin
Do you have a few favorite books that you recommend to anyone with an interest in biomedical computing? Are there software products or Web sites that you love to evangelize? We’d like to open...
Sep, 01, 2005
While science educators actively debate the relative merits of teaching natural science in an integrated fashion, some authors are writing texts that will make it happen. Philip Nelson’s book,...
Jun, 01, 2005
One of our goals at Biomedical Computation Review is to create a sense of kinship among members of this very diverse community of researchers. This column provides reviews of some of the latest and...
Jun, 01, 2005
Disentangling the different types of skeptics and what modelers can learn from each.
What are the telltale signs of a modeling talk at a biology conference? Just look for the sighs, shifting, and eye-rolling in the audience, says Donald C. Bolser, PhD, professor of physiological...
Jun, 05, 2012
As barriers to massive imaging collections fall, researchers can look at human systems in their entirety rather than in pieces
In the beginning there was the Visible Human. It broke new ground by gathering some 2,000 serial images from a death row inmate’s cadaver, and was the first time researchers had sectioned a...
Jul, 01, 2007
They've gone from hype to backlash. Now it's time for reality: How microarrays are being used to benefit healthcare
When DNA microarray technology emerged more than a decade ago, it was met with unbridled enthusiasm. By allowing scientists to look at the expression of enormous numbers of genes in the genome...
Oct, 01, 2006
Transparent peer review, replication studies, and journals of negative results all suggest change is on the horizon
As I was writing this editorial, I learned about yet another scientific paper being retracted. This time it was a genetics paper in Science, one of the hundreds of retractions that the blog...
Sep, 01, 2011
A virtual metabolic network represents intracellular traffic
It’s hard to imagine a map depicting the daily flow of traffic on water, wheels and foot throughout San Diego—or any large city—over the course of a day. “That map can...
Apr, 01, 2007
How errors in data, software, and methodology can teach us how to do better
In 2006, a paper in Nature Medicine suggested a novel and potentially revolutionary method for predicting patient responses to cancer therapies using gene signatures. The finding piqued the interest...
Sep, 01, 2011
Computational modeling can help fill gaps in how we develop and review new drugs and devices
What role does computational modeling play at the United States Food and Drug Administration (FDA)? If you ask Paul Watkins, MD, director of the Hamner—University of North Carolina...
Sep, 01, 2011
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