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Benchmarks for Musculotendon Models

Assuring accuracy and efficiency

In simulations of human activities such as running, hundreds of individual musculotendon models turn on and off to swing the arms and legs. Naturally, these simulations can only be as accurate and...
muscle models, tendon models
Jun, 19, 2013
Protein Mechanica: Structural Modeling for the Experimentalist

Filling a gap in single molecule experimental work

Scientists sometimes find themselves up to their elbows in Styrofoam balls, pipe cleaners, and metal rods as they try to build models of the molecules they are studying. Now, they can exchange all...
Apr, 01, 2010
Feedback for the Brain and Body: A New Freely Available Interface Between MATLAB and OpenSim
Even when we simply stand still on two feet, our brains communicate with our muscles—firing them appropriately to keep us upright against gravity. So when scientists simulate simple or complex...
Jun, 06, 2012
Reaching Under the Hood of a 20-year-old Musculoskeletal Model

Confidence boost for modelers

It’s often said that all models are wrong, but some are useful. And one model that certainly falls in the “useful” category is the human lower-limb model that Scott Delp published...
Jun, 01, 2010
Accurate Molecular Dynamics Force Fields for the Scientific Masses

AMOEBA's polarizable force field now integrated with OpenMM

Many have long hoped that molecular dynamics calculations—the computation of how molecules move and interact with other molecules—would revolutionize the world of synthetic chemistry,...
AMOEBA, force field, OpenMM, polarizable force field
Sep, 01, 2011
Grand Challenge Competition Provides Rich Data Set to Improve Joint Contact Force Predictions
There are numerous musculoskeletal modeling methods available to make predictions of muscle and joint contact forces. While such predictions can help improve treatments for movement-related disorders...
knee
Jan, 02, 2012
The Ease and Grace of OpenSim 3.0

New release improves both GUI and API

OpenSim, the neuromuscular modeling and simulation software, is now available in a new digit: 3.0. The change (up from 2.4) reflects significant improvements that make this open source tool more...
OpenSim
Oct, 19, 2012
Biomedical Computation Review: The Simbios 5th Anniversary Issue
Dear Reader,   In this eighteenth issue of Biomedical Computation Review (BCR), we bring you a special edition devoted to the work of the magazine’s publisher: the Simbios National Center...
Oct, 01, 2009
An insider’s view of biological structures
In March, Simbios released version 1.0 of the SimTK Simulation toolkit. A cornerstone of this release is Simbody, a new piece of the open-source SimTK Core toolkit for physics-based simulation....
Apr, 01, 2008
Efficiently Evaluating Mathematical Expressions with OpenCL Code

A unique opportunity to build both flexibility and high performance into a piece of software.

OpenCL is a cross-platform language for doing general purpose computation on graphics processing units (GPUs) and other massively parallel architectures. One of its most interesting features is the...
Apr, 01, 2010
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