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On Simulating Growth and Form

Simulations can teach us how young bodies and faces develop; how an artery compensates for decades of fatty plaque deposits by growing and thickening its walls; how tissue engineers can best coax endothelial cells to develop into organized sheets of skin for burn patients; and how cancerous tumors invade neighboring tissue.

For better or for worse, and on many levels, our tissues never stop growing and changing. While developing from childhood to old age, we grow not only bone, cartilage, fat, muscle and skin, but also...
Apr, 01, 2008
The Golden Age of Public Databases: Speeding Biomedical Discovery

Public databases impact not only how research is done but what kind of research is done in the first place.

The setting: a scientific conference in January 2008. The speaker, Bruce Ponder, MD, PhD, an oncology professor at Cambridge University, is describing a previously unknown link between a particular...
Oct, 01, 2008
Ramping Up to Multiscale: Taking Biomedical Modeling to a New Level

Multi-scale modeling is now at what might be called its gestational stage

For centuries, mathematics has been an indispensable ally of the physical sciences and engineering. Planes fly and telephones work because engineers know how to simplify physical systems into...
Apr, 01, 2006
Bringing Supercomputers to Life (Sciences)

Supercomputers open up new horizons, offering the possibility of discovering new ways to understand life’s complexity

Their very names sound like dinosaurs. Teracomputers. Petacomputers. These are, in fact, the dinosaurs of the digital world—monstrous, hungry and powerful. But unlike the extinct...
Oct, 01, 2006
Nature Versus Nurture In Silico

Neighbor cells affect stem cell differentiation in computer simulation

Every generation, a few nonconformists crop up in tissue cultures of genetically identical cells. The question is: are the wayward simply born that way, or did something in the environment affect...
Jul, 01, 2007
Simulating Populations with Complex Diseases
Diabetes, breast cancer, multiple sclerosis, Alzheimer’s disease. All are associated with several genes’ alleles interacting in complex ways with one another and the environment. Now,...
Jul, 01, 2007
Flowing through the Interactome
High-throughput experimental methods are widely used today to identify genes and proteins involved in a particular process, but not all molecules in a pathway can be identified in this manner. To...
Jul, 01, 2009
2012 Update on the National Centers for Biomedical Computing

The Principal Investigators weigh in

Ever since the National Institutes of Health (NIH) began funding the National Centers for Biomedical Computing (NCBCs) just over seven years ago, these powerhouses have been plugging away, building...
NCBC
Feb, 29, 2012
The Active Transport of Ideas

Researchers examine the connection between editorial boards of medical informatics and bioinformatics journals

How ideas spread gets at the very fabric of scholarly research and has been studied from many different angles.   Many studies examine person-to-person connectivity in social networks. Within a...
Jul, 01, 2007
Synchronizing Cells

Synthetic biologists explain cell behaviors while desinging new ones

Without synchronized clocks—whether embedded in our body’s cells or programmed into our desktop computers—any kind of coordinated activity is impossible. So after synthetic...
Apr, 01, 2010
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