Home
  • About
  • Archive
  • Contact
  • Subscribe
Art That's A BLAST

Ecce Homology is a physically interactive new-media work that visualizes genetic data as calligraphic forms.

A group of artists and scientists has created an interactive artwork using BLAST (Basic Local Alignment Search Tool), one of the foundational algorithms for comparative genomics. Normally, the BLAST...
Sep, 01, 2005
Allen Brain Atlas Launched
In three dimensions, researchers can now visualize the location and activity of more than 21,000 genes in a normal mouse brain.  The Allen Brain Atlas, funded with $100 million in seed money...
Jan, 01, 2007
Sensational Sequences

A new media artwork explores novel ways to represent and intuitively understand nature in the metagenomic era

What’s it like to be immersed in a dataset of millions of DNA sequences? Audiences of ATLAS in silico—a new media artwork that explores novel ways to represent and intuitively understand...
Oct, 01, 2008
Interactive Handheld Molecules
Thirty years ago, molecular biologists routinely constructed protein models out of brass rods (“Kendrew models”). In recent years, researchers put away such tinker toys and turned to...
Aug, 31, 2005
Learning about cells by examining how they scatter light

Looking inside the cell without opening it

When light hits an obstacle, its scattering pattern reveals information regarding the internal structure of the obstacle. If that obstacle is a cell, the scattering pattern might indicate whether the...
Jun, 01, 2005
Watching Blood Vessels Grow and Shrink

2-D simulation shows angiogenesis as it happens

Microscopic capillaries grow on demand, snaking toward hungry cells needing their blood supply. Understanding how to control this process could help scientists promote wound healing or halt cancer in...
Jan, 01, 2007
Mutual Information
Mutual information (MI) is defined in information theory as a measure of the dependencies between two random variables. There are many biomedical applications in which it is beneficial to quantify...
Jul, 01, 2007
The Brain in Transition
Patients with schizophrenia and other psychotic disorders are known to have adverse brain changes, such as reduced volume—but it’s unclear what comes first, the disease or the abnormality...
Apr, 01, 2009
Diffusion Tensor Imaging Tractography: Revealing Connectivity in the Living Brain
One of the major obstacles to studying the human brain has always been gaining access. Until relatively recently, almost all of what we knew about the brain was obtained through post-mortem ...
Apr, 01, 2008
A Viral Closeup

Computer reconstruction of electron microscope images reveals surprising bends in viral DNA.

The phi29 bacteriophage is an efficient infection machine—it fires its genome into a host bacterium, hijacks the host’s cellular equipment, and assembles an army of new viruses for its...
Oct, 01, 2008
  • ‹‹
  • 2 of 5
  • ››

SHARE THIS

  • Tweet
  • Email

POPULAR ARTICLES

Big Data Analytics In Biomedical Research

Can the complexities of biology be boiled down to Amazon.com-style recommendations?  The examples here suggest possible pathways to an intelligent healthcare system with big data at its core.

01/02/12 by Katharine Miller

AlloPathFinder User Profile: Jung-Chi Liao

Columbia’s Jung-Chi Liao seeks pathways within proteins using AlloPathFinder, a Simbios tool he co-developed while at Stanford.

10/01/09 by Kristin Sainani, PhD, and Katharine Miller

More Than Fate: Computation Addresses Hot Topics in Stem Cell Research

Using computational models, researchers are gaining traction toward understanding what makes a stem cell a stem cell; how gene expression drives stem cell differentiation; why studying stem cell heterogeneity is important; and, ultimately, how stem cells control their fate.

04/01/10 by Katharine Miller

Popular Tags

DATA MINING  visualization

genomics  SIMULATION neuroscience

biomechanics Systems Biology

DRUG DISCOVERY Cancer DNA

Molecular Dynamics bioinformatics

SUBSCRIBE TO

RSS Feed
Subscribe to Print Edition
simbios logo

Supported by the National
Institutes of Health through
the NIH Roadmap for
Medical Research Grant.

Stanford University
James H. Clark Center S231
318 Campus Drive, MC: 5448
Stanford, CA 94305-5444

  • About
  • Archive
  • Contact
  • Subscribe