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Computing the Ravages of Time: Using Algorithms To Tackle Alzheimer’s Disease

Biomarker research, genetics, and imaging are all coming into play

In 1906, at a small medical meeting in Tübingen, Germany, physician Alois Alzheimer gave a now-famous presentation about a puzzling patient. At age 51, Auguste D.’s memory was failing...
Oct, 01, 2007
Error! – What Biomedical Computing Can Learn From Its Mistakes

How errors in data, software, and methodology can teach us how to do better

In 2006, a paper in Nature Medicine suggested a novel and potentially revolutionary method for predicting patient responses to cancer therapies using gene signatures. The finding piqued the interest...
publication, reproducible research, statistics, validation
Sep, 01, 2011
Point/Counterpoint: Clinical Data Repositories: Less than meets the eye OR More valuable than you'd expect?
POINT/ Less than meets the eye                                             ...
Oct, 05, 2012
A Crescendo of Protein Structures
A ten-year, $600-million program known as the Protein Structure Initiative (PSI) has already, in its five year pilot phase, greatly increased the speed at which protein structures can be determined,...
Jun, 01, 2005
Leveraging Social Media For Biomedical Research

How social media sites are rapidly doing unique research on large cohorts

It has become commonplace for people to use social media to share their healthcare stories, seek a community of individuals with the same diseases, and learn about treatment options. All this...
ALS, clinical trials, GWAS, Parkinsons, social media
Jan, 02, 2012
Personalized Cancer Treatment: Seeking Cures Through Computation

Incremental progress and measured successes

Personalized cancer therapy is now a reality. A handful of tumor-classifying tests and targeted drugs are in widespread clinical use; and early attempts are underway to match high-risk cancer...
Califano, cancer, Cancer Genome Atlas, G-DOC, network analysis, systems biology
Jan, 02, 2012
Dimension Reduction and Manifold Learning: When Less Is More
The Fall 2005 “Under the Hood” column discussed the curse of dimensionality—too many numerical components for each data point—and the curse of dataset sparsity—too few...
Oct, 01, 2010
Parsing PubMed

iHOP organizes interconnected information

Text-mining tools such as iHOP (Information Hyperlinked Over Proteins) are doing for biological literature what hyperlinks and search engines do for the Internet: organizing interconnected...
Apr, 01, 2007
Mutual Information
Mutual information (MI) is defined in information theory as a measure of the dependencies between two random variables. There are many biomedical applications in which it is beneficial to quantify...
Jul, 01, 2007
Automating Scientific Discovery

A robot that develops hypotheses of its own

Robots already have a place in many labs, automating tedious tasks such as pipetting samples. But a new system designed at Aberystwyth University in the United Kingdom has taken laboratory automation...
Jul, 01, 2009
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