Home
  • About
  • Archive
  • Contact
  • Subscribe
Where Tuberculosis Meets Computation: 10 Points of Intersection

Computation offers a window into a disease often described as a black box

The growing threats of multi-drug resistant (MDR) and extensively drug resistant (XDR) tuberculosis (TB) are spurring worldwide interest in faster and more innovative research approaches, such as...
Jun, 06, 2012
Privacy and Biomedical Research: Building a Trust Infrastructure

An exploration of data-driven and process-driven approaches to data privacy

Trust. It’s the basis of every patient/physician interaction: Shared personal health information is kept confidential and used only for the patient’s benefit. It’s a tradition that...
de-identification, differential privacy, HIPAA, k-anonymity, l-anonymity, privacy
Jan, 02, 2012
Solving the 3-D RNA Structure Puzzle with NAST
For proteins, structure information leads to an understanding of function. The same turns out to be true for ribozymes, ribosomal RNAs, and some other recently discovered RNAs. But mapping out that...
Mar, 01, 2009
Building RNA 3-D Structure
The structure of RNA is an important key to its function—including its role in disease. However, the structure of most RNAs is unknown because their extreme flexibility and high charge...
Mar, 01, 2009
Three New Centers
The National Institutes of Health Roadmap for Medical Research has recently completed the first stage of an ambitious program to expand the computational infrastructure and software tools needed to...
Jan, 01, 2006
Leveraging Social Media For Biomedical Research

How social media sites are rapidly doing unique research on large cohorts

It has become commonplace for people to use social media to share their healthcare stories, seek a community of individuals with the same diseases, and learn about treatment options. All this...
ALS, clinical trials, GWAS, Parkinsons, social media
Jan, 02, 2012
Semantic Publishing and Scientific Journals
Keeping up with the literature is a challenge for all scientists. But some researchers are making it easier by enhancing the usability and understanding of an article’s contents in a variety of...
Jul, 01, 2009
Enhanced Function Recognition in Protein Trajectories over Space and Time

Simulating molecular movement gives a more accurate view of binding sites.

If a picture’s worth a thousand words, then a motion picture, such as that provided by molecular dynamics (MD) simulations, must contain a wealth of information.  It’s this potential...
Oct, 01, 2008
NCBCs Take Stock and Look Forward: Fruitful Centers Face Sunset

From hardened software to scientific productivity, the NCBCs have changed the landscape for biomedical computing.  What will happen when their funding expires?

It has been eight years since the National Institutes of Health (NIH) funded the first National Centers for Biomedical Computing (NCBCs). With two or three years remaining in the program (...
ccb, i2b2, Magnet, na-mic, ncbo, NCIBI, Simbios
Oct, 19, 2012
Biological Evidence for Turing Patterns

Mouse hair development patterns follow Turing's predictions

In the 1950s, computer science pioneer Alan Turing suggested an elegantly simple mechanism for how biological patterns such as scales, feathers, and hair might form. Now, more than fifty years later...
Apr, 01, 2007
  • ‹‹
  • 4 of 18
  • ››

SHARE THIS

  • Tweet
  • Email

RELATED ARTICLES

The Top Ten Advances of the Last Decade & The Top Ten Challenges of the Next Decade

A recognition of biocomputing's successes...

06/01/05 by Eric Jakobsson, PhD

On Your Mark, Get Set, Build Infrastructure: The NCBC Launch

The first four National Centers for Biomedical...

06/01/05 by Katharine Miller with an Introduction by Eric Jakobsson, PhD

Spaced out Neurons

A grant to develop software tools to analyze...

06/01/05 by Katharine Miller

More Than Fate: Computation Addresses Hot Topics in Stem Cell Research

Using computational models, researchers are...

04/01/10 by Katharine Miller

POPULAR ARTICLES

Big Data Analytics In Biomedical Research

Can the complexities of biology be boiled down to Amazon.com-style recommendations?  The examples here suggest possible pathways to an intelligent healthcare system with big data at its core.

01/02/12 by Katharine Miller

AlloPathFinder User Profile: Jung-Chi Liao

Columbia’s Jung-Chi Liao seeks pathways within proteins using AlloPathFinder, a Simbios tool he co-developed while at Stanford.

10/01/09 by Kristin Sainani, PhD, and Katharine Miller

More Than Fate: Computation Addresses Hot Topics in Stem Cell Research

Using computational models, researchers are gaining traction toward understanding what makes a stem cell a stem cell; how gene expression drives stem cell differentiation; why studying stem cell heterogeneity is important; and, ultimately, how stem cells control their fate.

04/01/10 by Katharine Miller

Popular Tags

DATA MINING  visualization

genomics  SIMULATION neuroscience

biomechanics Systems Biology

DRUG DISCOVERY Cancer DNA

Molecular Dynamics bioinformatics

SUBSCRIBE TO

RSS Feed
Subscribe to Print Edition
simbios logo

Supported by the National
Institutes of Health through
the NIH Roadmap for
Medical Research Grant.

Stanford University
James H. Clark Center S231
318 Campus Drive, MC: 5448
Stanford, CA 94305-5444

  • About
  • Archive
  • Contact
  • Subscribe