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Busting Assumptions about Rainbows and 3-D Images

2-D visualizations by HemoVis software leads to faster, more accurate diagnoses

To diagnose heart disease noninvasively, scientists combine 3-D visualizations of the heart and blood vessels (reconstructed from CT scans) with computer simulations of blood flow. Typically, a...
blood flow simulation, HemoVis, visualization
Jan, 02, 2012
OpenSim User Profile: Jill Higginson, PhD

Jill Higginson at the University of Delaware uses OpenSim to study stroke.

from http://biomedicalcomputationreview.org/content/simbios-bringing-biomedical-simulation-your-fingertips   Jill Higginson, PhD, assistant professor of mechanical engineering at the University...
Oct, 01, 2009
OpenMM User Profile: Jesus Izaguirre, PhD

Notre Dame’s Jesus Izaguirre collaborates with Simbios to increase the time scales of protein folding simulations with OpenMM. Why team up with Simbios? Because “they are working on exciting problems and have good people,” he says.

from http://biomedicalcomputationreview.org/content/simbios-bringing-biomedical-simulation-your-fingertips   Jesus Izaguirre, PhD, associate professor of computer science and engineering at the...
Oct, 01, 2009
NAST User Profile: Li Niu, PhD

Li Niu of the University of Albany works with Simbios to understand an unusual RNA.

from http://biomedicalcomputationreview.org/content/simbios-bringing-biomedical-simulation-your-fingertips   Li Niu, PhD, associate professor of chemistry at the University of Albany, SUNY found...
Oct, 01, 2009
Modeling Whorls of Leaves

Computer simulation helps explain how plants grow

The petals of every flower and the leaves sprouting from every plant stalk have characteristic arrangements, a phenomenon called phyllotaxis. For two centuries, botanists have puzzled over the force...
Jul, 01, 2007
Complex Step Derivatives: How Did I Miss This?
One of the tasks faced by every scientific programmer sooner or later is the need to compute the derivative f'(x) from code for the original function f(x). This need arises in design and...
Jul, 01, 2006
Fulfilling the Promise of the NIH Roadmap Through National Engagement by the National Centers for Biomedical Computing (NCBC) and the CTSA Informatics
For major team-based Roadmap initiatives, National Institutes of Health (NIH) officials expect grantees to look beyond the focus of their individual projects to build bridges not only among funded...
Oct, 01, 2008
The Ease and Grace of OpenSim 3.0

New release improves both GUI and API

OpenSim, the neuromuscular modeling and simulation software, is now available in a new digit: 3.0. The change (up from 2.4) reflects significant improvements that make this open source tool more...
OpenSim
Oct, 19, 2012
Bringing the Fruits of Computation to Bear on Human Health: It’s a Tough Job but the NIH Has to Do It
The National Institutes of Health are on a mission: To understand and tackle the problems of human health. To make that daunting problem approachable, 15 of the 20 institutes divvy up human health...
Oct, 05, 2012
An insider’s view of biological structures
In March, Simbios released version 1.0 of the SimTK Simulation toolkit. A cornerstone of this release is Simbody, a new piece of the open-source SimTK Core toolkit for physics-based simulation....
Apr, 01, 2008
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